10 Popular Jon and Daenerys Fanfiction Stories to Read in 2023

If you are looking for some of the best Jon and Daenerys fanfiction, you have come to the right place. 

Jon and Daenerys are perhaps the most popular couple from the world-famous series A Song of Ice and Fire, but you may know it as Game of Thrones.

The book series A Song of Ice and Fire has been adapted into a television series known as Game of Thrones, and it is one of the most popular television shows of all time. 

It is revered worldwide, and just about everyone has at least heard of this show, even if they know nothing about it. 

This is a series that is full of violence, explicit scenes, and other adult content, and the fanfiction stories below are no different. 

The television show, as well as the book series, are targeted at adults, and the same caution should be taken for the stories below. 

With that said, this article will explore some of the most popular Jon and Daenerys fanfiction on AO3. 

Keep reading to learn more. 

1. The Last Hope for Westeros 

First up is a Jon and Daenerys fanfiction that has been in the works for nearly four years. 

This story is massive, and it will definitely require some commitment.

The White Walkers have won in this fanfic, and all hope seems lost. 

Jon is granted a gift from the gods to go back in time and save everyone from their devastating future. 

While he is time traveling, Jon decides to go to Pentos to save his true love, Daenerys. 

He reclaims the Iron Throne with Daenerys, and the two of them unite the Seven Kingdoms. 

But no time travel is ever without consequences, and Jon and Daenerys are not ready for the consequences of these changes. 

This story has everything you could want in a Jon and Daenerys fanfiction, including action, passion, and war. 

It is a popular story for good reason. 

2. The Raven’s Plan 

The next Jon and Daenerys fanfiction that we will look at is another story that involves time travel. 

In this fanfic, the Second War for the Dawn is over. 

The Others have won, and it seems that there is no hope left. 

That is, until one person concocts quite a unique plan that just might save them all.  

This story involves a lot of death, as is expected for a story in this genre, but there are a few deaths that you certainly will not be expecting. 

Don’t worry, though, there is still plenty of romance and romantic tension mixed in with all of the action and fighting. 

Though Jon and Daenerys’ relationship is not at the forefront of this story, it is still and important element that adds to it. 

3. My Father’s Son

Next up is a Jon and Daenerys fanfiction that just might be one of the more explicit. 

This story has a lot of mature romantic content, violence, and death. 

Check out some of the more specific content warnings before getting too far into this story. 

This story focuses on Rhaegar and Lyanna, so it is a bit of an alternate universe. 

Jon and Daenerys both feature in this story, as well, but their romance is not the main focus. 

Rhaegar is a brooding prince who is living a lie about his father’s ability to rule. 

After he is forced to marry Lyanna, his heart begins to soften, and we see a new side of this once troubled man. 

He must confront the lies that haunt him and must make some difficult decisions. 

This story is unique in that it features some lesser-known characters, and we get to see what the story might have been like if they had lived. 

4. Lies

In this Jon and Daenerys fanfiction, we largely focus on Jon and Ned. 

Daenerys is still an integral player in this story, but their relationship is not at the forefront. 

In the world of this story, Ned Stark is not executed, but instead, he joins the Night’s Watch. 

He arrives at the wall just in time to tell Jon the truth about his mother. 

As we know, this is a startling truth that changes Jon’s life. 

It is interesting to see how Ned can change the course of the story and bring new life to a critical plot point. 

At some point, just about every Game of Thrones character is featured in this story, so you can get a glimpse of all of your favorites throughout its 140 chapters. 

5. Dragons of Ice and Fire

Have you ever wondered what it would be like if Jon Snow were a dragon?

Well, in this Jon and Daenerys fanfiction, you can find out. 

Jon faces the White Walkers, and he discovers a power that just might change his life, as well as the world around him. 

He journeys south as a dragon, and he sees the world begin to shift. 

This story is dark and violent but very well-written and engaging. 

It is very different from many of the other stories, and the romance takes a bit of a backseat to many of the other plot lines. 

6. Her Life and Her Death 

If you are looking for a slow-burn romance, this is the Jon and Daenerys fanfiction for you. 

In this story, their romance is slow to develop and full of tension. 

This story begins with a baby Daenerys and young Jon being raised and growing up in ways we have not seen before. 

This story covers the events of many years, and we get to see how Jon and Daenerys become the people we know them to be. 

It is a bit of a coming-of-age story, but there is still plenty of violence and death amid their upbringings. 

As the Great Game commences across the sea, the fate of Westeros is changed forever. 

7. Home

Next up is a Jon and Daenerys fanfiction that gives new life to season 8 of Game of Thrones. 

The author of this story begins at the end of the 7th episode of season 7 and explores some possibilities and new realities that could have replaced the events of season 8. 

For those of us who were disappointed in the 8th season of the show, this is a great story to get a new take on what might have happened. 

In this story, Jon and Daenerys travel northward to fight for their people, their home, and each other. 

Many of our favorite characters appear in this story, though they make decisions and choices that are slightly unusual. 

This story focuses heavily on Jon and Daenerys’ romance.

It is a great choice if you want to see their relationship grow and blossom right before your eyes. 

8. An Empire of Ice and Fire

This Jon and Daenerys fanfiction starts where the tv show picks up in season 1.

However, the author of this story quickly takes it in a new direction. 

In this story, Jon and Daenerys meet much earlier on, and their relationship is as tumultuous as ever. 

They have much more time to develop and establish their relationship, and it changes the entirety of the story. 

In the midst of this budding romance, a simple twist of fate takes Jon and Ned on a journey that changes everything. 

This story is full of twists and turns, and the author takes the story we love and gives it a revamp.

The characters remain very true to who we know them to be, but now they are facing new enemies and new relationships. 

This is an exciting story full of all of the violence and mature content that you could ever want in a Game of Thrones fanfiction. 

9. Our Choices Seal Our Fate 

In this Jon and Daenerys fanfiction, the alternate universe that we enter is one that just might make your head spin. 

In this world, there is no Battle of the Trident, and Rhaegar soon takes over the throne from his father. 

Everything in the kingdom quickly goes south, and there seems to be no way to fix it. 

Jon goes to war with his dead mother’s family, and we see how different things truly are. 

This is a new world with characters taking on completely unique and unexpected roles. 

There are new alliances and new relationships, though some of our favorites remain the same. 

This story is unique and unlike any other. 

10. A Song for Dragons 

The final Jon and Daenerys fanfiction that we will look at is quite long with nearly 600,000 words. 

This story is just the beginning of a series that this author is working on, and it appears to be an extensive and exciting fanfiction series. 

In this story, winter is coming yet again and summer is coming to a close with a quickening pace. 

Jon travels across the Narrow Sea and finds himself walking a path that brings him in conflict with a cruel dragon prince. 

This prince is willing to sell his sister for access to the Iron Throne and thus begins the story of Jon and Daenerys. 

This story features countless different characters, and they are all written well. 

The author of this story has a knack for writing dialogue and conflict without it coming off as forced or unrealistic. 

Jon and Daenerys Fanfiction: Conclusion

I hope this article has helped you find some great fanfiction featuring romance from this couple!

These 10 are just a small sample of all the amazing stories out there.

So be sure to take a look and find your own favorite among them.

And if you have questions about this topic, feel free to leave a message in the comments below!

Lastly, if you want to read more top fanfiction posts on this blog, then check out:

• 10 of the Most Popular Game of Thrones Fanfics to Check Out in 2022 (based more on the show than on the books)
• The Best Song of Fire and Ice Fanfiction to Read in 2022 (based more on the books than on the show)
• 10 Popular Harry Potter Fanfiction Stories to Read in 2022